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This repository was archived by the owner on May 31, 2024. It is now read-only.
N E X T F L O W ~ version 22.04.3 Pulling nf-core/sarek ... downloaded from https://github.com/nf-core/sarek.git WARN: It appears you have never run this project before -- Option -resume is ignored Launching 'https://github.com/nf-core/sarek' [fabulous_volhard] DSL2 - revision: 6aeac929c9 [master] Cannot find latest version of nf-validation plugin Cannot find latest version of nf-validation plugin === Nextflow Log === === Running Cleanup ===
Using:
NextFlow 22.04.4
AGC 1.6.0
Running on Mac M1 with Sonoma 14.2 / also running from AWS SageMaker
Node v20.1.0
zsh version 5.9
Following along with above linked tutorial - AGC activate and context deploy fine
Pipeline fails at the validation - suggestions are to enter the validation module version manually to the nextflow.config - using AGC doesn't seem to allow this
Expect pipeline to complete as it does when built on an EC2 launcher using AWS Batch following the NextFlow tutorial as per NextFlow on AWS - I have this running successfully - was trying out AGC as a potential solution for an easily deployable contained module.
Operating System:
AGC Version: 1.6.0
Was AGC setup with a custom bucket: yes
Was AGC setup with a custom VPC: no