[SQL] [Biobank] 0000-00-06-biobank.sql fix order and add into test DB (#10027)

ERROR 1452 (23000): Cannot add or update a child row: a foreign key
constraint fails (test_dev_270.biobank_specimen_type_unit_rel,
CONSTRAINT FK_biobank_specimen_type_unit_rel_TypeID FOREIGN KEY
(SpecimenTypeID) REFERENCES biobank_specimen_type (SpecimenTypeID))
ERROR 1452 (23000): Cannot add or update a child row: a foreign key
constraint fails (test_dev_270.biobank_specimen_type_parent, CONSTRAINT
FK_biobank_specimen_type_parent_SpecimenTypeID FOREIGN KEY
(SpecimenTypeID) REFERENCES biobank_specimen_type (SpecimenTypeID))
ERROR 1452 (23000): Cannot add or update a child row: a foreign key
constraint fails (test_dev_270.biobank_specimen_type_container_type_rel,
CONSTRAINT FK_biobank_specimen_type_container_type_rel_SpecimenTypeID
FOREIGN KEY (SpecimenTypeID) REFERENCES `biobank_specimen_t)

when sourcing schema

Author: kongtiaowang

Dockerfile.test.db

@@ -13,6 +13,7 @@ RUN cat /sql/0000-00-00-schema.sql \
         /sql/0000-00-03-ConfigTables.sql \
         /sql/0000-00-04-Help.sql \
         /sql/0000-00-05-ElectrophysiologyTables.sql \
+        /sql/0000-00-06-BiobankTables.sql \
         /instruments_sql/*.sql \
         /test_instrument.sql \
         /RB_files/*.sql \

SQL/0000-00-06-BiobankTables.sql

@@ -378,18 +378,27 @@ CREATE TABLE `biobank_container_shipment_rel` (
 
 -- Insert units, processes, container status and shipment status
 INSERT INTO `biobank_unit` VALUES (1,'mL'),(2,'µL');
-INSERT INTO `biobank_specimen_attribute_datatype` VALUES (1, 'text'),(2, 'number'),(3, 'date'),(4, 'time'),(5, 'boolean');
-INSERT INTO `biobank_specimen_protocol` VALUES (1, 'Blood Collection', 1, 1), (2, 'Blood Preparation', 2, 1), (3, 'Serum Collection', 1, 2);
-INSERT INTO `biobank_specimen_type` VALUES (1,'Blood',0),(2,'Serum', 1);
-INSERT INTO `biobank_specimen_type_unit_rel` VALUES (1, 1), (2, 2);
-INSERT INTO `biobank_specimen_type_parent` VALUES (2, 1);
-INSERT INTO `biobank_container_dimension` VALUES (1, 1, 1, 1, 1, 0, 0), (2, 10, 1, 10, 0, 1, 0), (3, 1, 0, 5, 0, 1, 0);
-INSERT INTO `biobank_container_capacity` VALUES (1, 1, 1);
-INSERT INTO `biobank_container_type` VALUES (1, 'Brand', 'Product Number 1', 'Vial', 1, 1, 1), (2, 'Brand', 'Product Number 2', 'Matrix Box', 0, null, 2), (3, 'Brand', 'Product Number 3', 'Rack', 0, null, 3);
-INSERT INTO `biobank_specimen_type_container_type_rel` VALUES (1, 1), (2, 1);
-INSERT INTO `biobank_specimen_process` VALUES (2,'Analysis'),(1,'Collection'),(3,'Preparation');
-INSERT INTO `biobank_container_status` VALUES (1,'Available'),(4,'Discarded'),(3,'Dispensed');
+INSERT INTO `biobank_specimen_attribute_datatype` VALUES (1,'text'),(2,'number'),(3,'date'),(4,'time'),(5,'boolean');
+INSERT INTO `biobank_specimen_process` VALUES (1,'Collection'),(2,'Analysis'),(3,'Preparation');
+INSERT INTO `biobank_container_status` VALUES (1,'Available'),(3,'Dispensed'),(4,'Discarded');
 INSERT INTO `shipment_status` VALUES (1,'cancelled'),(2,'created'),(3,'received'),(4,'returned'),(5,'shipped');
+INSERT INTO `biobank_specimen_type` VALUES (1,'Blood',0),(2,'Serum',1);
+INSERT INTO `biobank_container_dimension`
+VALUES (1,1,1,1,1,0,0),
+       (2,10,1,10,0,1,0),
+       (3,1,0,5,0,1,0);
+INSERT INTO `biobank_container_capacity` VALUES (1,1,1);
+INSERT INTO `biobank_container_type`
+VALUES (1,'Brand','Product Number 1','Vial',1,1,1),
+       (2,'Brand','Product Number 2','Matrix Box',0,NULL,2),
+       (3,'Brand','Product Number 3','Rack',0,NULL,3);
+INSERT INTO `biobank_specimen_protocol`
+VALUES (1,'Blood Collection',1,1),
+       (2,'Blood Preparation',2,1),
+       (3,'Serum Collection',1,2);
+INSERT INTO `biobank_specimen_type_unit_rel` VALUES (1,1),(2,2);
+INSERT INTO `biobank_specimen_type_parent` VALUES (2,1);
+INSERT INTO `biobank_specimen_type_container_type_rel` VALUES (1,1),(2,1);
 
 -- Insert ConfigSettings for label printing endpoint
 INSERT INTO ConfigSettings (Name, Description, Visible, AllowMultiple, Label, OrderNumber) VALUES ('biobank', 'Settings related to the biobank module', 1, 0, 'Biobank', 16);

php/installer/Installer.class.inc

@@ -34,7 +34,8 @@ class Installer
         '02-Permission.sql',
         '03-ConfigTables.sql',
         '04-Help.sql',
-        '05-ElectrophysiologyTables.sql'
+        '05-ElectrophysiologyTables.sql',
+        '06-BiobankTables.sql'
     ];
 
     /**