Dirghayu AI Models & WGS Support #12

	name: API Integration Tests

	on:
	push:
	branches: [ main ]
	paths:
	- 'src/api/**'
	- 'src/models/**'
	- 'src/data/**'
	pull_request:
	branches: [ main ]

	jobs:
	api-test:
	name: Test API Endpoints
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4

	- name: Install uv
	run: curl -LsSf https://astral.sh/uv/install.sh \| sh

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.11"

	- name: Install dependencies
	run: \|
	export PATH="$HOME/.cargo/bin:$PATH"
	uv pip install --system -r requirements.txt
	uv pip install --system httpx pytest-asyncio

	- name: Create sample data
	run: python scripts/download_data.py

	- name: Start API server (background)
	run: \|
	python src/api/server.py &
	sleep 5 # Wait for server to start
	echo "API_PID=$!" >> $GITHUB_ENV

	- name: Test health endpoint
	run: \|
	curl -f http://localhost:8000/ \|\| exit 1
	echo "✓ Health check passed"

	- name: Test variant annotation endpoint
	run: \|
	curl -f -X POST http://localhost:8000/api/v1/annotate/variant \
	-H "Content-Type: application/json" \
	-d '{"chrom":"1","pos":11856378,"ref":"C","alt":"T"}' \
	\|\| exit 1
	echo "✓ Variant annotation endpoint working"

	- name: Test OpenAPI spec generation
	run: \|
	curl -f http://localhost:8000/openapi.json > openapi.json
	cat openapi.json \| jq . > /dev/null \|\| exit 1
	echo "✓ OpenAPI spec valid JSON"

	- name: Upload OpenAPI spec
	uses: actions/upload-artifact@v4
	with:
	name: openapi-spec
	path: openapi.json

	- name: Stop API server
	if: always()
	run: kill $API_PID \|\| true

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