snakedeploy/pyproject.toml at main · TRON-Bioinformatics/snakedeploy · GitHub

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[project]
name = "snakedeploy"
version = "0.16.0"
description = "Deployment and maintenance related toolbox for Snakemake"
license = "MPL-2.0"
authors = [
    { name = "Johannes Koester", email = "johannes.koester@uni-due.de"},
    { name = "Vanessa Sochat", email = "vsochat@stanford.edu" }
]
readme = "README.md"
requires-python = ">=3.11,<3.13"
dependencies = [
    "jinja2>=3.1.6",
    "packaging>=25.0",
    "pandas>=2.3.1",
    "pygithub>=2.6.1",
    "pyyaml>=6.0.2",
    "requests>=2.32.4",
    "reretry>=0.11.8",
    "toml>=0.10.2",
]

[project.urls]
Homepage = "https://snakedeploy.readthedocs.io"
Repository = "https://github.com/snakemake/snakedeploy"
Documentation = "https://snakedeploy.readthedocs.io"

[project.scripts]
snakedeploy = "snakedeploy.client:main"

[dependency-groups]
dev = [
    "pytest>=8.4.1",
    "ruff>=0.12.4",
    "sphinx>=7.2.6,<8",
    "sphinx-argparse>=0.4.0,<0.5",
    "sphinxawesome-theme>=5.2.0,<6",
    "twine>=6.1.0,<7",
]

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.pixi.workspace]
channels = ["conda-forge", "bioconda"]
platforms = ["linux-64", "osx-arm64"]

[tool.pixi.pypi-dependencies]
snakedeploy = { path = ".", editable = true }

[tool.pixi.environments]
default = { solve-group = "default" }
dev = { features = ["dev"], solve-group = "default" }
publish = { features = ["publish"] }

[tool.pixi.tasks]

[tool.pixi.feature.dev.tasks]
format = "ruff format"
check = "ruff check"
test = "/bin/bash tests/test_client.sh"
build-docs = "sphinx-build -b html docs/ docs/_build/html"


[tool.pixi.feature.dev.dependencies]
conda = ">=25.7.0,<26"

[tool.pixi.feature.publish.dependencies]
twine = ">=6.1.0,<7"
python-build = ">=1.2.2,<2"

[tool.pixi.feature.publish.tasks]
build = { cmd = "python -m build", description = "Build the package into the dist/ directory" }
check-build = { cmd = "python -m twine check dist/*", depends-on = [
  "build",
], description = "Check that the package can be uploaded" }