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Hi,
I want to use my scRNAseq dataset using a pretrained model.
https://sydneybiox.github.io/scClassify/articles/pretrainedModel.html
pred_res <- predict_scClassify(exprsMat_test = exprsMat_wang_subset,
trainRes = trainClassExample_xin,
cellTypes_test = wang_cellTypes,
algorithm = "WKNN",
features = c("limma"),
similarity = c("pearson", "spearman"),
prob_threshold = 0.7,
verbose = TRUE)
In the vignette the wang_cellTypes where extracted from a preexisting dataset, but my scRNAseq doesn't have any assigned celltypes. How would you proceed with this?
Thanks
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