CHANGELOG

Version 0.2.0
* First stable version

Version 0.2.5
* Bug fixes
* Added more normalization methods

Version 0.3.0
* Bug fixes
* Optimized the normalization
* Unsupervised allows to center size factors by mean
* Unsupervised allows to computed adjusted log normalized counts
* Unsupervised allows to compute the number of clusters automatically
* Supervised allows to normalize the data
* Supervised allows to input train/classes with different spots
  than in the train/test data and in different order
* st_data_plotter allows to highlight selected spots
* st_data_plotter only plots the spots where the gene is present
  when a gene reg-exp is given
* st_data_plotter allows to normalize the data
* differential_analysis allows to normalize the data
* differential_analysis allows to input more than one dataset

Version 0.3.2
* The orientation of the cell tissue image is correct now

Version 0.3.3
* Fixed a bug in the visualization module

Version 0.4.0
* Removed deprecated scripts
* Adjusted some formats and parameters

Version 0.4.1
* Fixed a bug in the noise filtering function

Version 0.4.2
* Added compatibility with Python 3

Version 0.4.6
* Added merge_replicates.py script
* Added slice_regions_matrix.py script
* Optimized and improved differential_analysis.py
* Added compatibility with R 3.4 and rpy2 latest versions

Version 0.5.0
* Fixed bugs
* Added support for biocparalell
* Added extract_spots.py script

Version 0.5.1
* Small bug fixes
* Plots can be now generated in computers with not graphic card
* Improved the unsupervised.py script with a new clustering method