The current pangenome script cannot handle cases where 2 identical locus tags exist for different sequences. This happens from time to time when prokka/bakta is called for annotation. These scripts need to be updated to reflect this and be more inline with other pangenome generation tools' outputs.
The current pangenome script cannot handle cases where 2 identical locus tags exist for different sequences. This happens from time to time when prokka/bakta is called for annotation. These scripts need to be updated to reflect this and be more inline with other pangenome generation tools' outputs.