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Create unified quickstart guide and improve docs #61

@katehoffshutta

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@katehoffshutta

Currently, we have several half-finished demo scripts floating around the repository. This issue has three parts:

  1. Develop a unified quickstart guide (Rmd/html) for new users
  2. Produce up-to-date PDF manual of R package documentation using devtools
  3. Remove old half-finished demos from repository

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