.gitignore

# EEG pipeline derivatives (checkpoints, not source)
derivatives/
*.set
*.fdt
*.bdf
*.edf
*.mat

# Allow-list: track small QA artifacts under derivatives/ (figures, csv,
# params) so 3-subject results survive repo moves; heavy .set/.fdt/.bdf/
# .mat files stay ignored via the extension-based rules above.
#
# Caveat: this is a permissive allow-list. The extension rules catch the
# real heavy binaries, but `git add derivatives/` would also stage stray
# text files (notes.txt, scratch.json) if anyone created them. The denylist
# below blocks the common stray patterns; reviewers should still check the
# diff before merging.
!derivatives/
!derivatives/**/
derivatives/**/*.txt
derivatives/**/*.log
derivatives/**/scratch*
derivatives/**/_bids_import_scratch/
derivatives/**/_amica/
!derivatives/**/*.png
!derivatives/**/qa_*.csv
!derivatives/**/params.json
!derivatives/**/README.md

# Allow-list: track the real-EEG test fixture so CI can run MATLAB tests
# without the maintainer's /Volumes mount. The fixture is small (~2.3 MB,
# 60 s of one HBN R3 subject; license CC-BY-SA 4.0 inherited).
!tests/fixtures/
!tests/fixtures/**/
!tests/fixtures/**/*.bdf
!tests/fixtures/**/*.tsv
!tests/fixtures/**/*.json
!tests/fixtures/**/*.md
!tests/fixtures/**/README

# MATLAB scratch
*.asv
*.m~
slprj/
codegen/

# macOS / editor
.DS_Store
.vscode/
.idea/

# Python helpers (if added)
.venv/
__pycache__/
*.pyc
.pytest_cache/
.ruff_cache/
.ty_cache/

# Secrets / local config
.env
.env.*
!.env.example
*.local

# .claude/ is tracked so collaborators see project agents, commands,
# and epic-dev state. Only the per-user permission file is private.
.claude/settings.local.json
logs/
tmpflist