Skip to content

Error on downloading auxiliaries #2

@NixBio

Description

@NixBio

Base Information

Distributor ID: Debian
Description:    Debian GNU/Linux 11 (bullseye)
Release:        11
Codename:       bullseye
Python 3.7.12
snakemake 8.20.6

call
./modr install --ref-path /mypath/software/ngs/BioinfCore/modr_auxilaries/ --force --threads 12

output:

./modr install --ref-path /mypath/software/ngs/BioinfCore/modr_auxilaries/ --force --threads 12
modr (0.6.1)
Merging chunks...
Extracting tarball... /mypath/software/ngs/BioinfCore/modr_auxilaries/merged_chunks.tar.gz
Traceback (most recent call last):
  File "/mypath/software/package/miniconda3/lib/python3.7/shutil.py", line 932, in _unpack_tarfile
    tarobj = tarfile.open(filename)
  File "/mypath/software/package/miniconda3/lib/python3.7/tarfile.py", line 1580, in open
    raise ReadError("file could not be opened successfully")
tarfile.ReadError: file could not be opened successfully

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "./modr", line 1236, in <module>
    main()
  File "./modr", line 1232, in main
    args.func(args)
  File "./modr", line 360, in install
    unpack_archive(tarball, sub_args.ref_path)
  File "/mypath/software/package/miniconda3/lib/python3.7/shutil.py", line 1002, in unpack_archive
    func(filename, extract_dir, **kwargs)
  File "/mypath/software/package/miniconda3/lib/python3.7/shutil.py", line 935, in _unpack_tarfile
    "%s is not a compressed or uncompressed tar file" % filename)
shutil.ReadError: /mypath/software/ngs/BioinfCore/modr_auxilaries/merged_chunks.tar.gz is not a compressed or uncompressed tar file

checking the download

ls -ahl
drwxrwxr-x+  2 ID group   42 Oct 11 15:50 .
drwxrwxr-x+ 16 ID group 4.0K Oct 11 15:48 ..
-rw-rw-r--+  1 ID group    0 Oct 11 16:30 merged_chunks.tar.gz

I could not find a hint where this should be pulled from, the install.json does not contain much.

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions