Should this type of insertion assemble be allowed?

[manulera]

from opencloning.assembly2 import Assembly, assembly2str, assemble
from pydna.dseqrecord import Dseqrecord


template = Dseqrecord('cccgaggggaatcgaa')
insert = Dseqrecord('ggggaatcAcccgag')

asm = Assembly((template, insert), limit=5, use_all_fragments=True)


for a in asm.get_insertion_assemblies():
    if a[0][0] == 1:
        print(assembly2str(a))
        prod = assemble(asm.fragments, a, is_insertion=True)
        print(prod.seq)
        print()

prints

('1[5:13]:2[0:8]', '2[9:15]:1[0:6]')
cccgaggggaatcAcccgaggggaatcgaa

This is the assembly:

1 cccgaggggaatcgaa
2 Acccgagggggaatc



  cccgaggggaatcgaa 1[5:13]
       ||||||||
       ggggaatcAcccgag    2[0:8]

       ggggaatcAcccgag    2[9:15]
                ||||||
                cccgaggggaatcgaa  1[0:6]

[manulera]

Check also values returned in test_insertion_edge_case

[manulera]

Also what about this? #68