address PR review comments

namiroues · namiroues · commit 86f33bbc151e · 2025-10-27T15:38:29.000Z
diff --git a/_config.yml b/_config.yml
@@ -24,7 +24,7 @@ url:              https://www.mdanalysis.org
 baseurl:          
 author:
   name:           The MDAnalysis Team
-  url:            https://www.mdanalysis.org/pages/team/
+  url:            https://www.mdanalysis.org/team/
   email:          mdanalysis@numfocus.org
 
 images:           /public/images
diff --git a/_posts/2024-11-22-release-2.8.0.md b/_posts/2024-11-22-release-2.8.0.md
@@ -281,8 +281,8 @@ the [Chan Zuckerberg Initiative][] for supporting MDAnalysis under EOSS4 and EOS
 [CHANGELOG]: https://github.com/MDAnalysis/mdanalysis/blob/release-2.8.0/package/CHANGELOG
 [Chan Zuckerberg Initiative]: https://chanzuckerberg.com/
 [licensing update]: {{ site.baseurl }}{% post_url 2023-09-22-licensing-update %}
-[roles]: {{ site.baseurl }}/pages/team/#roles
-[MDAnalysis Team]: {{ site.baseurl }}/pages/team
+[roles]: {{ site.baseurl }}/team/#roles
+[MDAnalysis Team]: ({{ site.baseurl }}/team/)
 [MDAKits]: https://mdakits.mdanalysis.org/
 [roadmap]: {{ site.baseurl }}{% post_url 2023-10-25-towards_3.0 %}#a-trimmed-down-core-library
 [mdaencore]: https://mdakits.mdanalysis.org/mdaencore.html
diff --git a/_posts/2025-02-14-new_coredevs.md b/_posts/2025-02-14-new_coredevs.md
@@ -55,7 +55,7 @@ If a candidate has shown a history of participating in these activities, they ar
 
 Finally, being an active Core Developer requires some amount of active participation in meetings, decisions, and other administrative business. As MDAnalysis does not have any guaranteed long-term funding, this work is usually unpaid. Therefore, the final decision to accept or decline the election is left to the developers themselves: do they have the time and willingness to keep contributing?
 
-If you are interested in becoming a Core Developer, we highly encourage you to [participate]({{ site.baseurl }}/#participating) in some of the activities listed above, especially reviewing pull requests and mentoring other developers. Learn more about the many roles MDAnalysis community members take on to move the project forward on our [MDAnalysis team]({{ site.baseurl }}/pages/team) page, and reach out to us on our [GitHub discussions forum]({{ site.mailinglists.discussion.url }}) or [Discord server]({{ site.discord.url }}) (join the server using the invitation link, [{{ site.discord.invite }}]({{ site.discord.invite }}). On our end, the MDAnalysis Core Developer team will, to the best of its abilities, aim to offer mentorship and other opportunities to people who express an interest in becoming a Core Developer.
+If you are interested in becoming a Core Developer, we highly encourage you to [participate]({{ site.baseurl }}/#participating) in some of the activities listed above, especially reviewing pull requests and mentoring other developers. Learn more about the many roles MDAnalysis community members take on to move the project forward on our [MDAnalysis team]({{ site.baseurl }}/team) page, and reach out to us on our [GitHub discussions forum]({{ site.mailinglists.discussion.url }}) or [Discord server]({{ site.discord.url }}) (join the server using the invitation link, [{{ site.discord.invite }}]({{ site.discord.invite }}). On our end, the MDAnalysis Core Developer team will, to the best of its abilities, aim to offer mentorship and other opportunities to people who express an interest in becoming a Core Developer.
 
 Being a Core Developer is work, but it’s also a fantastic opportunity to work with and for a wonderful and welcoming community. As part of [our mission]({{ site.baseurl }}/about/#mission), we welcome anyone who cares for this community and wants to help it grow.
 
diff --git a/_posts/2025-03-11-release-2.9.0.md b/_posts/2025-03-11-release-2.9.0.md
@@ -129,7 +129,7 @@ the [Chan Zuckerberg Initiative][] for supporting MDAnalysis under EOSS4 and EOS
 [NumFOCUS]: https://www.numfocus.org
 [CHANGELOG]: https://github.com/MDAnalysis/mdanalysis/blob/release-2.9.0/package/CHANGELOG
 [Chan Zuckerberg Initiative]: https://chanzuckerberg.com/
-[roles]: {{ site.baseurl }}/pages/team/#roles
-[MDAnalysis Team]: {{ site.baseurl }}/pages/team
+[roles]: {{ site.baseurl }}/team/#roles
+[MDAnalysis Team]: {{ site.baseurl }}/team
 [MDAKits]: https://mdakits.mdanalysis.org/
 [distopia]: https://github.com/MDAnalysis/distopia
diff --git a/about.md b/about.md
@@ -9,21 +9,21 @@ style="float: right" alt="MDAnalysis" width="30%"/>
 
 MDAnalysis is an open-source project dedicated to advancing molecular dynamics analysis through a robust software library, an active community, and sustainable governance. Our tools enable high-performance, reproducible computational studies supporting researchers across academia and industry.
 
-The MDAnalysis Project is committed to open-source, reproducible computational research. Our [Mission]({{ site.baseurl }}/mission/) guides our efforts in developing robust tools, fostering an inclusive community, and supporting scientists worldwide.
+The MDAnalysis Project is committed to open-source, reproducible computational research. Our [Mission]({{ site.baseurl }}/pages/mission/) guides our efforts in developing robust tools, fostering an inclusive community, and supporting scientists worldwide.
 
 ## Get Involved
 
-- **Follow Our Code of Conduct:** We foster a welcoming, inclusive environment. Read our [Code of Conduct]({{ site.baseurl }}/conduct/) before participating.
+- **Follow Our Code of Conduct:** We foster a welcoming, inclusive environment. Read our [Code of Conduct]({{ site.baseurl }}/pages/conduct/) before participating.
 - **Join the Community:** Connect with other users, report issues, and contribute through multiple channels. Learn more on our [Community]({{ site.baseurl }}/community/) page.
-- **Contribute:** Whether through coding, documentation, community support, or event organization, you can help shape the MDAnalysis ecosystem. Get started with our [Contributing Guide]({{ site.baseurl }}contribute/) or [join a team]({{ site.baseurl }}team/) to support specific initiatives. 
+- **Contribute:** Whether through coding, documentation, community support, or event organization, you can help shape the MDAnalysis ecosystem. Get started with our [Contributing Guide]({{ site.baseurl }}/contribute/) or [join a team]({{ site.baseurl }}/team/) to support specific initiatives. 
 - **Support MDAnalysis:** MDAnalysis relies on grants, sponsorships, and donations to sustain development and community events. Your support helps fund maintenance, development, UGMs (User Group Meetings), workshops, and more. Learn more on our [Funding]({{ site.baseurl }}/pages/funding/) page.
 - **Share your Feedback:** MDAnalysis welcomes feedback for improvement from its users and community. Share your thoughts on MDAnalysis, the community, or events by filling out [this feedback form][].
 
 ## Team & Leadership
 
 MDAnalysis is maintained by the [Core Developers]({{ site.baseurl }}/pages/governance/#mdanalysis-core-developers) who lead the project and make key decisions regarding its development. Past contributors who've stepped back become Emeriti Core Developers.
 
-Our governance structure ensures transparency and sustainability. See our [Governance]({{ site.baseurl }}/pages/governance/) and [Team]({{ site.baseurl }}/pages/team/) pages for more details.
+Our governance structure ensures transparency and sustainability. See our [Governance]({{ site.baseurl }}/pages/governance/) and [Team]({{ site.baseurl }}/team/) pages for more details.
 
 ## Funding & Sponsors
 
@@ -44,12 +44,11 @@ MDAnalysis is:
 
 - **Easy to install** &mdash; Available via `pip`, `conda/mamba` and `conda-forge`.
 - **Openly developed** &mdash; The [source code]({{ site.github.repo }}) is hosted on GitHub.
-- **Regularly updated** &mdash; Official releases are distributed via [PyPI][].
+- **Regularly updated** &mdash; Official releases are distributed via [PyPI]({{ site.pypi.package }}).
 
 For full installation instructions and setup guides, visit our [Getting Started]({{ site.baseurl }}/getting_started/) page.
 
 [GNU Lesser General Public License, version 2.1 or later (LGPLv2.1+)]: https://www.gnu.org/licenses/lgpl-2.1.html
-[PyPI]: https://pypi.org/project/MDAnalysis/
 [this feedback form]: https://docs.google.com/forms/d/e/1FAIpQLScAjjI730i63LbyVkk_tuZ1-FCXUkg6xFugw_gmcsqUvBUtnw/viewform?usp=sf_link
 [NumFOCUS]: https://www.numfocus.org
 
diff --git a/community.md b/community.md
@@ -11,7 +11,7 @@ in a file called `AUTHORS` in each source code repository and in the list of
 contributions; for example, see the [`AUTHORS` file for mdanalysis](https://github.com/MDAnalysis/mdanalysis/blob/develop/package/AUTHORS) and the [contributors for
 mdanalysis](https://github.com/MDAnalysis/mdanalysis/graphs/contributors).
 
-MDAnalysis is widely used in scientific research and is described in various [academic publications]({{site.baseurl}}/pages/citations/). It also serves as the foundation for several other [molecular dynamics tools]({{site.baseurl}}/mdakits/).
+MDAnalysis is widely used in scientific research and is described in various [academic publications]({{site.baseurl}}/citations/). It also serves as the foundation for several other [molecular dynamics tools]({{site.baseurl}}/mdakits/).
 
 This page provides an overview of **how you can engage with the MDAnalysis community, where to seek support, and how to participate**. 
 
@@ -22,6 +22,7 @@ Follow our official channels for news, updates, and major announcements:
 - [News]({{ site.baseurl }}/blog/) &mdash; News, development highlights, tutorials, and releases.
 - [LinkedIn](https://www.linkedin.com/company/mdanalysis/) &mdash; Professional networking, project updates, event announcements, and industry connections.
 - [Bluesky](https://bsky.app/profile/mdanalysis.bsky.social) &mdash; Community-driven discussions and project insights.
+- [Events]({{ site.baseurl }}/events/) &mdash;  Upcoming (and past) user group meetings, workshops, and hackathons.
 
 ## Ask Questions & Get Help
 
diff --git a/contribute.md b/contribute.md
@@ -10,7 +10,7 @@ You can contribute by **developing new features, fixing bugs, improving document
 
 Contributions also extend to our **mentoring and outreach programs**, where participants gain hands-on experience in open-source development and scientific software. You can also contribute by **mentoring new contributors**, helping them navigate MDAnalysis, review their work, and share best practices.
 
-If you're new, you can start by participating in community conversations and mentoring programs. For more information on how you can participate, check out the [Community]({{ site.baseurl }}/community/) and [Events]({{ site.baseurl }}events) pages.
+If you're new, you can start by participating in community conversations and mentoring programs. For more information on how you can participate, check out the [Community]({{ site.baseurl }}/community/) and [Events]({{ site.baseurl }}/events/) pages.
 
 The [MDAnalysis Project][] hosts several open-source repositories beyond the main library and MDAKits. You are welcome to contribute to any of them! Each repository typically has a `CONTRIBUTING.md` file to help you get started. If you’re unsure where to begin, you can:
 
@@ -93,24 +93,24 @@ We have been involved in several mentoring initiatives:
 - **[CompChemURG](https://www.bindingsites.co.uk/home)**  \
     A mentoring initiative focused on computational chemistry, supporting undergraduates and early-career researchers in gaining expertise in the field.
 
-Many of our [core developers]({{ site.baseurl }}/governance/#mdanalysis-core-developers) started through these programs &mdash; consider joining and becoming part of the MDAnalysis community!
+Many of our [core developers]({{ site.baseurl }}/pages/governance/#mdanalysis-core-developers) started through these programs &mdash; consider joining and becoming part of the MDAnalysis community!
 
 ### GSoC
 MDAnalysis has participated in Google Summer of Code for several years, mentoring students on a variety of open-source projects. Explore our past projects:
 
-- [GSoC 2025]({% post_url 2025-02-28-gsoc2025 %})
-- [GSoC 2024]({% post_url 2024-02-27-gsoc2024 %})
-- [GSoC 2023]({% post_url 2023-02-22-gsoc2023 %})
-- [GSoC 2022]({% post_url 2022-03-07-gsoc2022 %})
-- [GSoC 2021]({% post_url 2021-03-09-gsoc2021 %})
-- [GSoC 2020]({% post_url 2020-02-22-gsoc2020 %})
-- [GSoC 2019]({% post_url 2019-03-04-gsoc2019 %})
-- [GSoC 2018]({% post_url 2018-02-14-gsoc2018 %})
-- [GSoC 2017]({% post_url 2017-03-02-gsoc2017 %})
+- [GSoC 2025]({% post_url 2025-05-23-gsoc-students %})
+- GSoC 2024 — [Small Projects]({% post_url 2024-08-30-gsoc2024-final-sm %}); [Large Projects]({% post_url 2025-02-11-gsoc2024-final-lg %})
+- [GSoC 2023]({% post_url 2024-01-18-gsoc2023-final %})
+- [GSoC 2022]({% post_url 2022-12-15-gsoc_outreachy2022-final %})
+- [GSoC 2021]({% post_url 2021-9-14-gsoc2021-final %})
+- [GSoC 2020]({% post_url 2020-09-10-gsoc2020-final %})
+- [GSoC 2019]({% post_url 2019-05-24-gsoc-students %})
+- [GSoC 2018]({% post_url 2018-04-26-gsoc-students %})
+- [GSoC 2017]({% post_url 2017-06-04-gsoc-students %})
 - [GSoC 2016]({% post_url 2016-04-26-gsoc %})
 
 ## Other Contributions
-If you are interested in contributing in other ways, such as writing a **blog post**, we welcome contributions that document your experience with MDAnalysis &mdash; whether it's learning the software, participating in a UGM, or working on a project. Feel free to reach out via the [Community]({{ site.baseurl }}/community/) page for guidance on submitting a post.
+If you are interested in contributing in other ways, such as writing a **blog post**, we welcome contributions that document your experience with MDAnalysis &mdash; whether it's learning the software, participating in a user group meeting, or working on a project. Feel free to reach out via the [Community]({{ site.baseurl }}/community/) page for guidance on submitting a post.
 
 If you are interested in improving our website, you can refer to the [README file][] in the [Website Repository][]. While the website is already maintained by the MDAnalysis team, any fixes and updates are always welcome.
 
diff --git a/documentation.md b/documentation.md
@@ -4,7 +4,7 @@ title: Documentation
 order: 5
 ---
 
-The MDAnalysis library (`import MDAnalysis`) is open-source code, available under the [GNU Lesser General Public License, version 2.1 or later (LGPLv2.1+)](https://www.gnu.org/licenses/lgpl-2.1.html). MDAnalysis provides **comprehensive documentation** to help users at all levels&mdash;whether you're just getting started, developing new tools, or contributing to the project. From **step-by-step tutorials** to an in-depth **API reference**, these resources will guide you through installing, using, and extending MDAnalysis.
+The [MDAnalysis library]({{ site.github.repo }}) (`import MDAnalysis`) is open-source code, available under the [GNU Lesser General Public License, version 2.1 or later (LGPLv2.1+)](https://www.gnu.org/licenses/lgpl-2.1.html). MDAnalysis provides **comprehensive documentation** to help users at all levels&mdash;whether you're just getting started, developing new tools, or contributing to the project. From **step-by-step tutorials** to an in-depth **API reference**, these resources will guide you through installing, using, and extending MDAnalysis.
 
 The MDAnalysis Project maintains many other software projects related to working with data in the molecular sciences, which can be found under the [MDAnalysis GitHub organization](https://github.com/MDAnalysis).
 
@@ -19,9 +19,9 @@ The [User Guide]({{ site.docs.userguide.url }}) is the best place for new users
 The [API Reference]({{ site.docs.mdanalysis.url }}) offers detailed documentation on all MDAnalysis modules, classes, and functions&mdash;perfect for developers and advanced users.
 
 ## MDAnalysis Paper
-Learn about the design philosophy and scientific impact of MDAnalysis in the [MDAnalysis paper]({{ site.baseurl }}/pages/citations#Gowers2016).
+Learn about the design philosophy and scientific impact of MDAnalysis in the [MDAnalysis paper]({{ site.baseurl }}/citations#Gowers2016).
 
 ---
 
-If you need help or have ideas, visit our [Community]({{ site.baseurl }}/pages/community) page to learn about available discussion channels.
+If you need help or have ideas, visit our [Community]({{ site.baseurl }}/community) page to learn about available discussion channels.
 
diff --git a/events.md b/events.md
@@ -13,11 +13,13 @@ For the latest discussions, **join the MDAnalysis community channels** by visiti
 For mentoring programs and outreach opportunities, please visit the [Contribute]({{ site.baseurl }}/contribute/) page.
 
 <!--  Uncomment the following section when new events are announced 
-
-## Upcoming Events
-
 - [Upcoming Event Name](#)
 -->
+## Upcoming Events
+
+| **Title and Website** | **Date(s)** | **Format** | **Additional Links** |
+| ----- | ------- | ------ | -------------- |
+| [UGM 2025]({{ site.baseurl }}/pages/ugm2025/) | Nov 9-11, 2025 | Hybrid | [Announcement]({% post_url 2025-04-13-ugm2025 %}) |
 
 ## User Group Meetings (UGMs)
 
@@ -70,7 +72,7 @@ Workshop materials are made publicly available under open source licenses. Recor
 ## Hosting Your Own MDAnalysis Workshops
 **Have you previously hosted/Are you already organizing an MDAnalysis workshop?** [Let us know][partner-workshops], as we would love to help you spread the word and share information about your event.
 
-**Would you like to host your own MDAnalysis workshop**, but don't know where to get started, have questions on available workshop materials, or would like to seek other support from the [MDAnalysis workshop team]({{ site.baseurl }}/pages/team/)? [Get in touch][partner-workshops] to let us know how we can best support you.
+**Would you like to host your own MDAnalysis workshop**, but don't know where to get started, have questions on available workshop materials, or would like to seek other support from the [MDAnalysis workshop team]({{ site.baseurl }}/team/)? [Get in touch][partner-workshops] to let us know how we can best support you.
 
 
 [YouTube channel]: https://www.youtube.com/@mdanalysis3040
diff --git a/getting_started.md b/getting_started.md
@@ -46,8 +46,8 @@ In the following example, the end-to-end distance of a protein and the radius of
 ## Learning Resources
 
 To find out what else you can do, head over to [Learning
-MDAnalysis]({{ site.baseurl }}/pages/learning_MDAnalysis) to explore
+MDAnalysis]({{ site.baseurl }}/learning_MDAnalysis/) to explore
 tutorials and documentation.
 
-If you have questions, visit our [Community]({{ site.baseurl }}/pages/community) page to learn about available discussion channels. Happy coding!
+If you have questions, visit our [Community]({{ site.baseurl }}/community/) page to learn about available discussion channels. Happy coding!
 
diff --git a/index.md b/index.md
@@ -31,15 +31,16 @@ MDAnalysis is driven by an active **community of users and contributors**. Stay
 
 <!-- TODO: Add link [Get Involved]({{ site.baseurl }}/pages/about/#get-involved)
  -->
-- [Community]({{ site.baseurl }}/community/) &mdash; Get involved, ask questions, and collaborate.
 - [News]({{ site.baseurl }}/blog) &mdash; Stay updated with development news and community highlights.
+- [Community]({{ site.baseurl }}/community/) &mdash; Get involved, ask questions, and collaborate.
 - [Events]({{ site.baseurl }}/events/) &mdash; Join workshops, conferences, and mentoring programs.
 
 ## Contributing 
 
 Want to contribute to MDAnalysis? Here’s how:  
 
 - [Contribute]({{ site.baseurl }}/contribute/) &mdash; Learn how to help improve MDAnalysis through coding, documentation, or discussions.  
+- Join a [Team]({{ site.baseurl}}/team/) &mdash; Express your interest in contributing to any of the roles related to sustaining the MDAnalysis project.
 - [MDAKits and MDA-based tools]({{ site.baseurl }}/mdakits/) &mdash; Build and extend MDAnalysis with MDAKits.  
 - [Support MDAnalysis financially](#funding--support) &mdash; Donate via NumFOCUS to sustain the project.
 
diff --git a/learning_MDAnalysis.md b/learning_MDAnalysis.md
diff --git a/pages/ugm2024.md b/pages/ugm2024.md
diff --git a/pages/ugm2025.md b/pages/ugm2025.md
diff --git a/team.md b/team.md
