MAPGD/Makefile.in at master · LynchLab/MAPGD · GitHub

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SUBDIRS=src

PACKAGE_TARNAME = mapgd

prefix      = @prefix@
exec_prefix = @exec_prefix@
bindir      = @bindir@
includedir  = @includedir@
libdir      = @libdir@
libexecdir  = @libexecdir@
datarootdir = @datarootdir@
mandir      = @mandir@
man1dir     = @mandir@/man1
man5dir     = @mandir@/man5
DOCPATH     = @docdir@

HAVE_GSL=@HAVE_GSL@
HAVE_OMP=@HAVE_OMP@
HAVE_MPI=@HAVE_MPI@
HAVE_SQL=@HAVE_SQL@
HAVE_HTS=@HAVE_HTS@
HAVE_MAN=@HAVE_MAN@
USE_NLS=@USE_NLS@
HAVE_LZ4=@HAVE_LZ4@
PACKAGE_VERSION=@PACKAGE_VERSION@
PROGRAM_VERSION=$(shell cat ./src/mapgd_0.4/VERSION | cut -d '-' -f 1)

export OMPI_CXX=@CXX@

MPICXX=@MPICXX@ -std=c++11
CXX=@CXX@
OPENMP_CXXFLAGS=@OPENMP_CXXFLAGS@
CXXFLAGS=@CXXFLAGS@
LDFLAGS=@LDFLAGS@

LDLIBS += @INTLLIBS@

#SAMTOOLS FLAGS

#@Hsource@HTSDIR = @HTSDIR@
#@Hsource@HTSLIB = $(HTSDIR)/libhts.a
#@Hsource@HTSLIB_LIB = $(HTSLIB)
#@Hsource@BGZIP = $(HTSDIR)/bgzip

# HTSDIR is not always defined in ax_with_htslib
#HTSDIR := $(realpath @HTSDIR@)
HTSLIB_CPPFLAGS = @HTSLIB_CPPFLAGS@
HTSLIB_LDFLAGS =  @HTSLIB_LDFLAGS@
@Hinstall@HTSLIB_LIB = -lhts

#LZ4 FLAGS

LZ4_LIB = -L @LZ4_DIR@ -l llz4
LZ4_INCLUDE = -I @LZ4_DIR@

export

all:
all: $(SUBDIRS)

$(SUBDIRS):
	$(MAKE) -C $@
.PHONY: $(SUBDIRS)

nosql: NOSQL = 1
nosql: all
.PHONY: nosql


noomp: NOOMP = 1
noomp: all
.PHONY: noomp

docs:
	$(MAKE) -C $(SUBDIRS) docs
.PHONY: docs

dist:
	$(MAKE) -C $(SUBDIRS) dist
.PHONY: dist

echo:
	@echo HAVE_GSL $(HAVE_GSL)
	@echo HAVE_OMP $(HAVE_OMP)
	@echo HAVE_SQL $(HAVE_SQL)
	@echo HAVE_HTS $(HAVE_HTS)
	@cat config.log
.PHONY: echo

debug:
	$(MAKE) -C $(SUBDIRS) debug
.PHONY: dist

test: all
	$(MAKE) -C $(SUBDIRS) test
.PHONY: test

install: all
	$(MAKE) -C $(SUBDIRS) install
.PHONY: install

clean:
	rm -f config.log
	rm -f config.status
	$(MAKE) -C $(SUBDIRS) clean
.PHONY: clean

increment:
	$(MAKE) -C $(SUBDIRS) increment
.PHONY: clean


#test needs to prompt and remove untracked files.
push:
	$(MAKE) -C $(SUBDIRS) all
	$(MAKE) -C $(SUBDIRS) test
	$(MAKE) -C $(SUBDIRS) docs
	$(MAKE) -C $(SUBDIRS) clean
	rm -f ./bin/mapgd
	CXX=i686-w64-mingw32-c++
	TARGET=mapgd-win64.exe
	$(MAKE) -C $(SUBDIRS) all
	$(MAKE) -C $(SUBDIRS) clean
	CXX=x86_64-w64-mingw32-g++
	TARGET=mapgd-win32.exe
	$(MAKE) -C $(SUBDIRS) all
	$(MAKE) -C $(SUBDIRS) clean
	rm -f ./bin/mapgd
	cp Makefile.empty Makefile
	$(MAKE) -C $(SUBDIRS) increment
	PROGRAM_VERSION=$(shell cat ./src/mapgd_0.4/VERSION)
	git tag $(PROGRAM_VERSION)
	git add -u
	git commit
	git push
	git push origin $(PROGRAM_VERSION)
	rm -rf autom4te.cache/
	rm -rf aclocal.m4
	rm -rf config.log
	rm -rf config.status
	git checkout gh-pages
	./update.sh
	git checkout master
.PHONY: push