Exception in thread error

[NicoleSchieber]

In trying to use the RegistrationTree I got this error when adding a BigWarp node

Keymap list file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/keymaps/keymaps.yaml not found. Using builtin styles.
Appearance settings file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/appearance.yaml not found. Using defaults.
3D [dev] 1.6.0-scijava-3-SNAPSHOT-pre11-daily-experimental daily

3D View: Fetching source raw at resolution 8.6192 ,8.6192 ,8.6192 micrometer...
nFrames = 1
Keymap list file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/keymaps/keymaps.yaml not found. Using builtin styles.
Appearance settings file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/appearance.yaml not found. Using defaults.
3D View: Fetching source raw at resolution 8.632 ,8.632 ,8.632 micrometer...
nFrames = 1
typed ... WriteSequenceToHdf5.writeViewToHdf5PartitionFile
Keymap list file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/keymaps/keymaps.yaml not found. Using builtin styles.
Appearance settings file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/appearance.yaml not found. Using defaults.
Keymap list file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/keymaps/keymaps.yaml not found. Using builtin styles.
Appearance settings file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/appearance.yaml not found. Using defaults.
Keymap list file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/keymaps/keymaps.yaml not found. Using builtin styles.
Appearance settings file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/appearance.yaml not found. Using defaults.
Keymap list file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/keymaps/keymaps.yaml not found. Using builtin styles.
Appearance settings file /Users/uqnschie/Library/Application Support/sc.fiji.bigdataviewer/appearance.yaml not found. Using defaults.
Exception in thread "Thread-61" java.lang.NoSuchMethodError: bigwarp.BigWarpInit.createBigWarpData([Lbdv/viewer/Source;[Lbdv/viewer/Source;[Ljava/lang/String;)Lbigwarp/BigWarp$BigWarpData;
at de.embl.schwab.registrationTree.BigWarpManager.openBigWarp(BigWarpManager.java:44)
at de.embl.schwab.registrationTree.BigWarpManager.openBigwarpAtSelectedNode(BigWarpManager.java:37)
at de.embl.schwab.registrationTree.ui.RegistrationContextMenu.addTransformDialog(RegistrationContextMenu.java:185)
at de.embl.schwab.registrationTree.ui.RegistrationContextMenu$9.lambda$actionPerformed$0(RegistrationContextMenu.java:155)
at java.lang.Thread.run(Thread.java:748)
Exception in thread "Thread-62" java.lang.NoSuchMethodError: bigwarp.BigWarpInit.createBigWarpData([Lbdv/viewer/Source;[Lbdv/viewer/Source;[Ljava/lang/String;)Lbigwarp/BigWarp$BigWarpData;
at de.embl.schwab.registrationTree.BigWarpManager.openBigWarp(BigWarpManager.java:44)
at de.embl.schwab.registrationTree.BigWarpManager.openBigwarpAtSelectedNode(BigWarpManager.java:37)
at de.embl.schwab.registrationTree.ui.RegistrationContextMenu.addTransformDialog(RegistrationContextMenu.java:185)
at de.embl.schwab.registrationTree.ui.RegistrationContextMenu$9.lambda$actionPerformed$0(RegistrationContextMenu.java:155)
at java.lang.Thread.run(Thread.java:748)

[K-Meech]

Thanks @NicoleSchieber - hopefully I'll have time to look into this later this week. I imagine it's due to updates to BigWarp, as I haven't updated the code in this repo for a long time!

[K-Meech]

Hi @NicoleSchieber - just to update you, I'm still working on getting this running. Turns out there were a few different parts to update, so I'll let you know when I've fixed it 😄

[K-Meech]

@NicoleSchieber - I think I finally have a working version on the update site now 😄 If you update to the latest version, hopefully both the BigWarp + elastix parts will be working correctly now. Annoyingly, you do have to do one manual fix after you've updated Fiji to remove an old ejml file: follow the instructions on the image.sc forum. This is an issue with the main Fiji update site, which will hopefully be fixed soon.

Let me know if it's working for you!

[NicoleSchieber]

Thanks so much Kimberly, I will give it a go and come back to you!

[K-Meech]

Also, the ejml issue I mentioned above has been fixed on the main Fiji update site now. So it should work without following the fix from the forum 👍