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Merge branch 'GRYALL-👋SECI' of https://github.com/IsisComputingGroup/ibex_developers_manual into GRYALL-👋SECI
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‎doc/Overview.md‎

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## Documentation & Processes
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- [How to edit this documentation](Editing-the-Wiki)
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- [How to demonstrate IBEX](processes/meetings_with_scientists/Demo-notes): Some notes on what to show someone when demonstrating IBEX for the first time
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- [Notes from Retrospectives](processes/Retrospective-Notes): Notes from Sprint Retrospective meetings are recorded here.
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- [Decision Log](processes/Decision-Log): A place to write down decisions made.
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- [Documentation](processes/dev_processes/Project-Documentation): Documentation of the project and processes _(including why we have 3 wikis)_

‎doc/processes/instrument_details/CRISP-Instrument-Details.md‎

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CRISP uses two types of water bath
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1. Julabo (which model(s)?)
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1. Grant Water Bath
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* Update (25-06-2019): Grant water baths are no longer used. No longer any need to support them. See [#4457](https://github.com/ISISComputingGroup/IBEX/issues/4457)
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1. Haake N6 Water Bath. Haake has now been taken over by [ThermoFisher](https://www.thermofisher.com/uk/en/home/life-science/lab-equipment/water-baths-circulators-chillers.html). N6 model may be obsolete. Check existing SECI VI for logic and manual.
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* Update (25-06-2019): Haake water baths are no longer used. No longer any need to support them. See [#4456](https://github.com/ISISComputingGroup/IBEX/issues/4456)
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{#crisp_noteKeithley}
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{#crisp_noteHitachi}
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##### Note: Hitachi #####
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Hitachi L-7100 HPLC pump. Can't find L-7100 on Hitachi web-site (may be obsolete). Check existing SECI VI for logic and manual.
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Hitachi pumps are no longer supported in ISIS
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{#crisp_noteKnauer}
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##### Note: Knauer #####
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Knauer K-6 Electric Valve Drive. [Knauer web site](https://www.knauer.net)<br>
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K-6 model appears to have been superseded. Check existing SECI VI for logic and manual.
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K-6 model appears to have been superseded.
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{#crisp_noteKnauerHPLC}
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##### Note: Knauer HPLC #####
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Knauer HPLC 1050 [Knauer HPLC 1050 is discontinued.](https://www.knauer.net/en/discontinued-smartline-pump-1050-successor-azura-p-61l/p14161). Check existing SECI VI for logic and manual.
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Knauer HPLC 1050 [Knauer HPLC 1050 is discontinued.](https://www.knauer.net/en/discontinued-smartline-pump-1050-successor-azura-p-61l/p14161).
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{#crisp_noteNimaTrough}
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##### Note: Nima Trough #####
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##### Note: He3 Monitor #####
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He3 Monitor is an obsolete piece of equipment. It is no longer used. No need to support it.
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## CRISP SECI Configs ##
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Document information about CRISP SECI configs here.
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Configuration Name | Sub-Configurations | Last Accessed | Required |
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---------------------------------------|----------------------------------------------------|---------------|----------|
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CRISP_place_holder1.conf | - | dd/mm/yyyy | - |
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CRISP_place_holder2.conf | - | dd/mm/yyyy | - |
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## CRISP Genie Scripts ##
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Similarly, Document information about CRISP SECI Genie scripts here.
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## CRISP Notes ##
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CRISP has the following specialist panels:

‎doc/processes/instrument_details/EMMA-Instrument-Details.md‎

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Instrument scientist contact is **Jeffrey Sykora**.
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## Control System ##
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EMMA will migrate from the SECI control system to the IBEX control system in summer 2017.
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## EMMA Equipment ##
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The equipment listed below is used on EMMA. Please add new information (e.g. new items of equipment, new notes, information about drivers, etc. to this table).
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##### Note: Fermi Chopper Lift #####
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The Fermi chopper is lifted into position by a Galil controlled motor.<br>
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The Fermi chopper must not be operated when it is not in the beam (i.e. in the parked/upper position)
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There is a hardware interlock to prevent the Fermi chopper from being operated in the parked position. This interlock is implemented in the Galil controller, via a Galil program (described in the [EMMA chopper lifter - Handover](https://stfc365.sharepoint.com/:w:/r/sites/ISISExperimentControls/ICP%20Discussions/EMMA/EMMA%20chopper%20lifter%20-%20Handover.docx?d=wafc19324e3354636b5ab702a140668aa&csf=1&web=1&e=A6BnDe) document). In SECI a simple VI is used to provide a GUI, which passes parameters to the Galil program, so that the user can control the Fermi Chopper lift. IBEX should provide a similar capability via an IOC and OPI.
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There is a hardware interlock to prevent the Fermi chopper from being operated in the parked position. This interlock is implemented in the Galil controller, via a Galil program (described in the [EMMA chopper lifter - Handover](https://stfc365.sharepoint.com/:w:/r/sites/ISISExperimentControls/ICP%20Discussions/EMMA/EMMA%20chopper%20lifter%20-%20Handover.docx?d=wafc19324e3354636b5ab702a140668aa&csf=1&web=1&e=A6BnDe) document).
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{#emma_noteJaws}
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##### Note: Jaws #####
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{#emma_noteYZTable}
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##### Note: Y-Z Table #####
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Driven by Galil controlled motors.
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In SECI, Y-Z Table has its own GUI. No particular reason for this; it could be merged with the Rotation Stage UI.<br>
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[Photograph of Y-Z table](https://stfc365.sharepoint.com/sites/ISISExperimentControls/ICP%20Discussions/EMMA/EMMA_Y_Z_Table_2017_06_05.jpg).
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{#emma_noteRotationStage}
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##### Note: Rotation Stage #####
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Driven by Galil controlled motors.
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In SECI, Rotation Stage has its own GUI. No particular reason for this; it could be merged with the Y-Z Table UI.<br>
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[Photograph of Rotation Stage](https://stfc365.sharepoint.com/sites/ISISExperimentControls/ICP%20Discussions/EMMA/EMMA_Rotation_Stage_2017_06_05.jpg). It sits on top of the Y-Z table when in use.
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{#emma_noteCAENHT}
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1. [Tektronix Oscilloscope DPO7000](http://www.tek.com/oscilloscope/dpo7000-digital-phosphor-oscilloscope)
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1. [Tektronix Oscilloscope MSO4054](http://www.tek.com/oscilloscope/mdo4000c-mixed-domain-oscilloscope)
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## EMMA SECI Configs ##
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Document information about EMMA SECI configs here.
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Configuration Name | Sub-Configurations | Last Accessed | Required |
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----------------------------------------------------------|----------------------------------------------------------------|---------------|----------|
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## EMMA Genie Scripts ##
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Similarly, Document information about EMMA SECI Genie scripts here.
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## EMMA Notes ##
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Add any notes about special items of equipment, setup or conditions on EMMA that might impact the deployment and configuration of IBEX.

‎doc/processes/instrument_details/EMU-Instrument-Details.md‎

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## Background & Timeline ##
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EMU is a new 96-detector muon spin rotation spectrometer which is optimised for zero field and longitudinal field measurements at ISIS, on TS1. The [EMU](https://www.isis.stfc.ac.uk/Pages/EMU.aspx) web page describes the background to the instrument.
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## Control System ##
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EMU will migrate from the SECI control system to the IBEX control system in MMMMMMMM YYYY.
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## EMU Equipment ##
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The equipment listed below is used on EMU. Please add new information (e.g. new items of equipment, new notes, information about drivers, etc. to this table).
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There appears to be no driver for the Aeroflex 2023A in `C:\LabVIEW Modules\`. However, there is a driver for an Aeroflex 2030 in `C:\LabVIEW Modules\Drivers\Aeroflex 2030`.
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## EMU SECI Configs ##
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Document information about EMU SECI configs here.
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Configuration Name | Sub-Configurations | Last Accessed | Required |
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-----------------------------------|----------------------------------------------------|---------------|----------|
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EMU_place_holder1.conf | - | dd/mm/yyyy | - |
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EMU_place_holder2.conf | - | dd/mm/yyyy | - |
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## EMU Genie Scripts ##
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Similarly, Document information about EMU SECI Genie scripts here.
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### Booster heater issues
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Scientists initially raised concerns about intermittent invalid alarms and it appears this is due to communication failures to a mercury (see [#6286](https://github.com/ISISComputingGroup/IBEX/issues/6286)).

‎doc/processes/instrument_details/ENGIN-X-Instrument-Details.md‎

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{#enginx_noteHuber}
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##### Note: Huber #####
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2-degree of freedom Eulerian cradle. The Huber can be driven from a Galil. Gareth has created a VI to control this via SECI.
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2-degree of freedom Eulerian cradle. The Huber can be driven from a Galil.
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{#enginx_noteTheodolite}
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##### Note: Theodolite #####
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## ENGIN-X Notes ##
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* For each run, ENGIN-X generates .log and .txt files from the NeXus data file. The .txt files are "3-column" files (as opposed to the "2-column" data files used on other instruments. We need to determine if these "3-column" files are still required in the future and, if so, document how these "3-column" files are generated.
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* OpenGENIE is currently used to analyse ENGIN-X data. In due course, the ENGIN-X team should consider migrating to Mantid.
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## ENGIN-X SECI Configs ##
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Document information about ENGIN-X SECI configs here.
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## ENGIN-X Genie Scripts ##
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Similarly, Document information about ENGIN-X SECI Genie scripts here.
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* ENGIN-X currently has one large master OpenGENIE script, which is used in (almost?) all runs. This script has to be migrated to genie_python (or to a library of genie_python methods).
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* ENGIN-X also uses a position compensation script (to compensate for the movement of the target position as the sample is stretched on the stress rig).

‎doc/processes/instrument_details/GEM-Instrument-Details.md‎

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{#gem_noteMcLennan}
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##### Note: McLennan #####
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[see Collimator note](#gem_noteCollimator)
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## GEM SECI Configs ##
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`gem_heliox.conf` | - | 14/11/2016 | -
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`gem_sample_changer_matt.conf` | Choppers | 20/05/2016 | -
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`gem_ccr_matt.conf` | Choppers | 28/04/2016 | -
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`gem_sample_changer_Alex.conf` | Choppers | 24/02/2016 | -
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`gem_lowT_furnace_matt.conf` | Choppers | 04/12/2015 | -
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`gem_kelvinox_matt.conf` | - | 01/10/2015 | -
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`GEM_CRYOSTAT.conf` | Choppers | 24/07/2015 | -
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`gem_furnace_matt.conf` | Choppers, Furnace Pressure | 15/06/2015 | -
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`gem_polaris_sample_changer_matt.conf` | Choppers | 26/04/2015 | -
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`gem_furnace_ramp.conf` | Furnace Pressure | 03/04/2015 | -
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`gem_furnace.conf` | Furnace Pressure | 02/04/2015 | -
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`gem_3eurotherms.conf` | - | 20/03/2015 | -
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`gem_sample_changer.conf` | Choppers | 18/03/2015 | -
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`GEM_CRYOSTAT_matt.conf` | - | 02/06/2014 | -
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`gem_ccr.conf` | Choppers | 02/04/2014 | -
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`gem_8t cryo.conf` | GEM_Base, Choppers | 18/12/2013 | -
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`5 Axis.conf` | - | 20/07/2013 | -
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`gem_sample_changer_+_3_Eurotherms.conf` | 3_Eurotherms | 18/03/2013 | -
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`gem_tizrcell_matt.conf` | - | 16/10/2012 | -
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`gem_3eurotherms_pressure.conf` | - | 12/10/2012 | -
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`gem_ambient.conf` | - | 04/10/2011 | -
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`gem_3eurotherms_baritron.conf` | - | 16/04/2011 | -
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`gem_express.conf` | - | 23/02/2011 | -
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`gem_gazcell.conf` | - | 16/02/2011 | -
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`gem_cryo + eurotherm.conf` | - | 15/02/2011 | -
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`gem_7t cryomagnet.conf` | - | 15/02/2011 | -
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`Dave.conf` | - | 15/02/2011 | -
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`gem_kelvinox.conf` | - | 27/01/2011 | -
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`gem_cryo + ilm.conf` | - | 27/01/2011 | -
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`gem_cryo + ilm + SC.conf` | - | 27/01/2011 | -
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`gem_cryo + heliox.conf` | - | 27/01/2011 | -
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`gem_8t cryo + rotation.conf` | - | 27/01/2011 | -
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`gem_8t cryo + kelvinox.conf` | - | 27/01/2011 | -
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`gem_10t cryomagnet.conf` | - | 27/01/2011 | -
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## GEM Genie Scripts ##
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Similarly, Document information about GEM SECI Genie scripts here.
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## GEM Notes ##
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Add any notes about special items of equipment, setup or conditions on GEM that might impact the deployment and configuration of IBEX.

‎doc/processes/instrument_details/HIFI-Instrument-Details.md‎

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## Background & Timeline ##
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HIFI is high magnetic-field muon instrument at ISIS, on TS1. The [HIFI](https://www.isis.stfc.ac.uk/Pages/HIFI.aspx) web page describes the background to the instrument.
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## Control System ##
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HIFI will migrate from the SECI control system to the IBEX control system in MMMMMMMM YYYY.
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## HIFI Equipment ##
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The equipment listed below is used on HIFI. Please add new information (e.g. new items of equipment, new notes, information about drivers, etc. to this table).
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* no information on specific Julabo Water Baths - maybe HIFI uses water baths from the pool?
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* consult the [Julabo commands](/specific_iocs/temp_controllers/julabo_commands.xlsx) spreadsheet for specific details of which set of commands are used individual water baths.
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1. Haake Water Bath is now obsolete (replaced by Julabo, according to instrument scientist)
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* ~Haake Water Bath (apparently the following Haake water bath: WB9)~
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* ~Haake N6 Water Bath. Haake has now been taken over by [ThermoFisher](https://www.thermofisher.com/uk/en/home/life-science/lab-equipment/water-baths-circulators-chillers.html). N6 model may be obsolete. Check existing SECI VI for logic and manual (see `C:\LabVIEW Modules\Drivers\Haake N6`).~
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1. See also [Water Baths](https://www.isis.stfc.ac.uk/Pages/Water-Baths.aspx) list
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{#hifi_note-neocera}
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##### Note: Metrolab #####
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1. [PT2025 NMR Precision Teslameter](https://www.metrolab.com/products/pt2025/)
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* The PT2025 is now obsolete. Replaced by model PT2026.
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* See `C:\LabVIEW Modules\Instruments\HIFI\Metrolab PT2025 NMR` for SECI VI
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## HIFI SECI Configs ##
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Document information about HIFI SECI configs here.
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HIFI_place_holder1.conf | - | dd/mm/yyyy | - |
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HIFI_place_holder2.conf | - | dd/mm/yyyy | - |
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## HIFI Genie Scripts ##
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Similarly, Document information about HIFI SECI Genie scripts here.
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## HIFI Notes ##
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HIFI has the following specialist panels:
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1. MUON Jaws
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HIFI also has the following system:
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1. MUON Script (generator)

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