Gosling - Create Sashimi Plot

[adkinsrs]

Use data from Anoveros lab

• BigWig data for ATAC-seq
• Tabular output from STAR aligner for splice junction sites
  • https://physiology.med.cornell.edu/faculty/skrabanek/lab/angsd/lecture_notes/STARmanual.pdf (section 4.4)

Examples:

• https://gosling.js.org/?example=GREMLIN
• https://gosling.js.org/?example=doc_link

[adkinsrs]

Will also need a subticket to figure out the best way to add this as an uploader ability. There could be a container approach like with the multiwig files, but it may be more involved than that.

Order of operations is as follows:

1. Get Gosling spec to work
2. Create UCSC Genome Browser Trackhub mapping to Gosling spec
3. Add integration to uploader tool

[adkinsrs]

TODO: Add mm39 to HiGlass annotation selection, since this group uses mm39 and we only support mm10 right now. The chromosome ordered file is not available on Negspy's github repo so I'll need to manually make it or find an alternate source.