diff --git a/DESCRIPTION b/DESCRIPTION index 7b2867c..9d87adb 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -86,8 +86,6 @@ biocViews: Transcriptomics, SingleCell, Spatial -Remotes: - Huber-group-EMBL/Rarr@b0c8174 License: Artistic-2.0 Encoding: UTF-8 VignetteBuilder: knitr diff --git a/NAMESPACE b/NAMESPACE index f22eb4a..bd11b31 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -134,7 +134,6 @@ importFrom(S4Vectors,isSequence) importFrom(S4Vectors,make_zero_col_DFrame) importFrom(S4Vectors,metadata) importFrom(S4Vectors,setValidity2) -importFrom(S4Vectors,transform) importFrom(SingleCellExperiment,"int_colData<-") importFrom(SingleCellExperiment,"int_metadata<-") importFrom(SingleCellExperiment,SingleCellExperiment) @@ -150,6 +149,7 @@ importFrom(ZarrArray,ZarrArray) importFrom(ZarrArray,path) importFrom(ZarrArray,type) importFrom(anndataR,read_zarr) +importFrom(base,transform) importFrom(dplyr,all_of) importFrom(dplyr,coalesce) importFrom(dplyr,collect) diff --git a/R/trans.R b/R/trans.R index d26a8e4..a13ef37 100644 --- a/R/trans.R +++ b/R/trans.R @@ -50,8 +50,8 @@ NULL #' @export #' @rdname trans -#' @importFrom S4Vectors transform -setMethod("transform", "SpatialDataElement", \(`_data`, i=1, ...) { +#' @importFrom base transform +setMethod("transform", signature(`_data` = "SpatialDataElement", i = "ANY"), \(`_data`, i=1, ...) { stopifnot( length(i) == 1, is.character(i) | (is.numeric(i) && i == round(i)))