spatialdataR/DESCRIPTION at main · HelenaLC/spatialdataR · GitHub

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Package: spatialdataR
Title: Representation of Python's spatialdata in R
Depends: R (>= 4.6)
Version: 0.99.38
Description: R interface to Python/scverse's 'spatialdata' framework for
    unified spatial omics data handling. Adheres to OME-NGFF standards,
    providing lazy, on-disk representations for multiscale images and
    labels (ZarrArray), as well as points and shapes (DuckDB-backed
    tables). Includes handling of coordinate transformation systems and
    spatial utilities for cropping, masking, and querying. Integrates
    tabular annotations as 'SingleCellExperiment's (via 'anndataR'),
    enabling interoperable spatial omics workflows across R and Python.
Authors@R: c(
	person("Helena L.", "Crowell",
	    role=c("aut", "cre"),
	    email="helena@crowell.eu",
	    comment=c(ORCID="0000-0002-4801-1767")),
    person("Artür", "Manukyan",
        role=c("aut"),
        email="artur-man@hotmail.com",
        comment=c(ORCID="0000-0002-0441-9517")),
    person("Hugo", "Gruson",
        role=c("aut"),
        email="hugo.gruson@embl.de",
        comment=c(ORCID="0000-0002-4094-1476")),
    person("Vince", "Carey",
        role=c("aut"),
        email="stvjc@channing.harvard.edu",
        comment=c(ORCID="0000-0003-4046-0063")),
    person("Charlotte", "Soneson",
        role=c("aut"),
        email="charlotte.soneson@fmi.ch",
        comment=c(ORCID="0000-0003-3833-2169")),
    person("Michael", "Stadler",
        role=c("aut"),
        email="michael.stadler@fmi.ch",
        comment=c(ORCID="0000-0002-2269-4934")),
    person("Samuel", "Gunz",
        role=c("aut"),
        email="samuel.gunz@uzh.ch",
        comment=c(ORCID="0000-0002-8909-0932")),
    person("Yixing E.", "Dong",
        role=c("aut"),
        email="estelladong729@gmail.com",
        comment=c(ORCID="0009-0003-5115-5686")),
    person("Dario", "Righelli",
        role=c("aut"),
        email="dario.righelli@gmail.com",
        comment=c(ORCID="0000-0003-1504-3583")),
    person("Louise", "Deconinck",
        role=c("aut"),
        email="louise.deconinck@gmail.com",
        comment=c(ORCID="0000-0001-8100-6823")))
Imports:
    anndataR (>= 1.1.3),
    BiocGenerics,
    DBI,
    DelayedArray,
    dplyr,
    duckspatial,
    EBImage,
    graph,
    Matrix,
    methods,
    Rarr,
    RBGL,
    rlang,
    sf,
    S4Vectors,
    SingleCellExperiment,
    SummarizedExperiment,
    SparseArray,
    ZarrArray
Suggests:
    BiocStyle,
    knitr,
    paws,
    Rgraphviz,
    testthat
biocViews:
    DataImport,
    DataRepresentation,
    Infrastructure,
    ImmunoOncology,
    GeneExpression,
    Transcriptomics,
    SingleCell,
    Spatial
Remotes:
    Huber-group-EMBL/Rarr@b0c8174
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://helenalc.github.io/SpatialData/, https://github.com/HelenaLC/SpatialData
BugReports: https://github.com/HelenaLC/SpatialData/issues
Config/roxygen2/version: 8.0.0