Fix docs paths

Author: georgeholt1

docs/build_documentation.sh

@@ -5,7 +5,8 @@ make clean
 echo "Copying notebook files"
 mkdir -p notebooks
 cp "../examples/example00 - build_tokamak_machine.ipynb" notebooks
-cp "../examples/example01 - static_inverse_solve_MASTU.ipynb" notebooks
+cp "../examples/example01a - static_inverse_solve_MASTU.ipynb" notebooks
+cp "../examples/example01b - advanced_static_inverse_solve.ipynb" notebooks
 cp "../examples/example02 - static_forward_solve_MASTU.ipynb" notebooks
 cp "../examples/example03 - extracting_equilibrium_quantites.ipynb" notebooks
 cp "../examples/example04 - using_magnetic_probes.ipynb" notebooks
@@ -14,18 +15,15 @@ cp "../examples/example07 - static_inverse_solve_SPARC.ipynb" notebooks
 cp "../examples/example08 - static_inverse_solve_ITER.ipynb" notebooks
 cp "../examples/example09 - virtual_circuits_MASTU.ipynb" notebooks
 cp "../examples/example10 - growth_rates.ipynb" notebooks
-cp ../examples/simple_diverted_currents_PaxisIp.pk notebooks
-cp ../examples/simple_limited_currents_PaxisIp.pk notebooks
+cp -r ../examples/data notebooks
 
 echo "Copying images"
 mkdir -p _images
 cp ../_images/* _images
 
 echo "Copying machine configurations"
 mkdir -p machine_configs
-cp -r ../machine_configs/MAST-U machine_configs
-cp -r ../machine_configs/SPARC machine_configs
-cp -r ../machine_configs/ITER machine_configs
+cp -r ../machine_configs/* machine_configs
 
 echo "Generating API documentation"
 sphinx-apidoc -e -f --no-toc -o api/ ../freegsnke/

docs/user_guide/index.rst

@@ -12,8 +12,9 @@ The notebooks are displayed statically on the following pages, but running them
     :maxdepth: 1
 
     ../notebooks/example00 - build_tokamak_machine
-    ../notebooks/example01 - static_inverse_solve_MASTU
-    ../notebooks/example02 - static_forward_solve_MASTU.ipynb
+    ../notebooks/example01a - static_inverse_solve_MASTU
+    ../notebooks/example01b - advanced_static_inverse_solve
+    ../notebooks/example02 - static_forward_solve_MASTU
     ../notebooks/example03 - extracting_equilibrium_quantites
     ../notebooks/example04 - using_magnetic_probes
     ../notebooks/example05 - evolutive_forward_solve