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feat: added script for determining ground truth translation table based on taxonomic classifications #9

	name: Python Unit Tests

	on:
	push:
	branches: [ "main", "master" ]
	pull_request:
	branches: [ "main", "master" ]

	jobs:
	build-and-test:
	runs-on: ubuntu-latest

	# CRITICAL: Conda requires this specific shell configuration to activate environments properly
	defaults:
	run:
	shell: bash -el {0}

	steps:
	- name: Checkout code
	uses: actions/checkout@v3

	# 1. Set up Conda with the Bioconda channel
	- name: Set up Bioconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	python-version: "3.12"
	channels: conda-forge,bioconda,defaults
	channel-priority: strict
	activate-environment: test-env
	auto-activate-base: false

	# 2. Install Prodigal and Jellyfish via Conda
	- name: Install external dependencies
	run: \|
	conda install -y prodigal jellyfish

	# 3. Install your package and testing tools via pip
	- name: Install Python dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install .
	pip install pytest pytest-mock

	# 4. Run the tests
	- name: Run unit tests
	run: \|
	python -m unittest discover -s tests