GSDS/NAMESPACE at main · DimitriMeistermann/GSDS · GitHub

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# Generated by roxygen2: do not edit by hand

export(GSDS)
export(GSDS.Heatmap)
export(GSDS.HeatmapAnnot)
export(HEATmap)
export(VectorListToFactor)
export(activScorePC1)
export(auroc)
export(computeActivationScore)
export(computeColorScaleFun)
export(corrDist)
export(cosineDist)
export(covDist)
export(downloadGODB_BioMart)
export(drawSamplePerGroup)
export(enrich.fcs)
export(enrich.ora)
export(exportEnrich)
export(extendColorPalette)
export(extractFeatureMarkerData)
export(fcsScoreDEgenes)
export(genColorsForAnnots)
export(genRowAnnot)
export(genTopAnnot)
export(getDBsets)
export(getMarkers)
export(getSpeciesData)
export(ggBorderedFactors)
export(ggplotBreak)
export(gsds_colors)
export(htMarker)
export(linearScale)
export(mostDistantColor)
export(qauroc)
export(rowScale)
export(sortColorByDistance)
export(volcanoPlot)
export(whichTop)
import(AnnotationDbi)
import(ComplexHeatmap)
import(ggplot2)
import(grid)
importFrom(AnnotationDbi,keys)
importFrom(AnnotationDbi,select)
importFrom(RSQLite,SQLite)
importFrom(RSQLite,dbConnect)
importFrom(RSQLite,dbGetQuery)
importFrom(S4Vectors,DataFrame)
importFrom(SummarizedExperiment,"rowData<-")
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,rowData)
importFrom(fgsea,fgseaMultilevel)
importFrom(fgsea,reactomePathways)
importFrom(grDevices,col2rgb)
importFrom(grDevices,hcl)
importFrom(stats,.lm.fit)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,cor)
importFrom(stats,cov)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,na.omit)
importFrom(stats,p.adjust)
importFrom(stats,pbinom)
importFrom(stats,phyper)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(utils,data)
useDynLib(GSDS, .registration=TRUE)