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add ClinVar columns to Finalist Excel #29

	name: Test R package

	on:
	push:
	branches:
	- '*'
	pull_request:
	branches:
	- '*'

	jobs:
	r-cmd-check:
	runs-on: ubuntu-22.04

	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

	defaults:
	run:
	shell: bash -el {0}

	steps:
	- name: Checkout repository
	uses: actions/checkout@v3

	- name: Set up R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: '4.4.3'
	use-public-rspm: true

	- name: Install system dependencies
	run: \|
	sudo apt-get update -y
	sudo apt-get install -y \
	libcurl4-openssl-dev \
	libssl-dev \
	libxml2-dev \
	libfontconfig1-dev \
	libharfbuzz-dev \
	libfribidi-dev

	- name: Install R dependencies
	uses: r-lib/actions/setup-r-dependencies@v2
	with:
	cache-version: 1

	- name: Check package
	run: make check

	- name: Test package
	run: make test