increased memory

Author: FlorianBarkmann

configs/integration/umap_rms.yaml

@@ -23,7 +23,7 @@ random_seeds: 1
 scenarios:
   rms_all:
     data_path: data/raw/rms_all.h5ad
-    mem_scaling: 2.0
+    mem_scaling: 3.0
     labels_path: labels/RMS.csv
 
   rms_scrna:

rules/integration/Snakefile

@@ -100,6 +100,7 @@ use rule integration_base as bbknn_integration with:
     output: cfg.ROOT / "integration/{method}/{scenario}_{n_samples}_{random_seed}/{n_hvg}/{batch_key}/latent.npz"
     wildcard_constraints: method="bbknn.*"
     container: "docker://fbarkmann/cansig:base"
+    group: "fast_integration"
     threads: 6
     params:
         script="scripts/integration/bbknn_latent.py"