updated config #62

	name: Deploy Sphinx documentation to Pages

	on:
	push:
	branches: [main] # or your default branch
	workflow_dispatch:

	# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
	permissions:
	contents: read
	pages: write
	id-token: write

	# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
	# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
	concurrency:
	group: "pages"
	cancel-in-progress: false

	jobs:
	build:
	runs-on: ubuntu-latest
	steps:
	- name: Checkout
	uses: actions/checkout@v4

	- name: Setup Python
	uses: actions/setup-python@v5
	with:
	python-version: '3.x'

	- name: Setup Pages
	uses: actions/configure-pages@v4

	- name: Install dependencies
	run: \|
	pip install sphinx sphinx-book-theme myst-parser sphinx-design scanpy

	- name: Build documentation
	run: \|
	sphinx-build -b html docs/source docs/build/html

	- name: Upload artifact
	uses: actions/upload-pages-artifact@v3
	with:
	path: docs/build/html

	deploy:
	environment:
	name: github-pages
	url: ${{ steps.deployment.outputs.page_url }}
	runs-on: ubuntu-latest
	needs: build
	steps:
	- name: Deploy to GitHub Pages
	id: deployment
	uses: actions/deploy-pages@v4

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